mdadash.backend.analyses.dssp

DSSP Analysis

Classes

DSSPAnalysis()

DSSP

class mdadash.backend.analyses.dssp.DSSPAnalysis

Bases: WidgetBase

DSSP

This widget uses MDAnalysis.analysis.dssp.dssp.DSSP to assign secondary structure of the protein using DSSP algorithm.

Inputs

Run frequency

The frequency with which the widget is run - every-frame or batch

Default: every-frame

Run mode

The mode in which the widget is run - serial or parallel

Default: serial

Custom title

Custom title for the plot

Default: ‘’

Max values

Max values to show in plot

Default: 100

X-axis

X-axis value - time or step

Default: time

Output

Here is an example output plot of this widget:

Tip

This widget supports batching and can run in parallel

apply_parallel_results(values)

apply parallel results handler

description = 'Secondary structure assignment of protein'

get_parallel_job()

get parallel job handler

name = 'DSSP Analysis'

on_input_change(attribute, _old_value, new_value)

on_input_change handler

on_post_connect()

on_post_connect handler

on_post_create()

on_post_create handler

run_batch()

batch run handler

run_every_frame()

every-frame run handler